STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI57128.1PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rde:RD1_3446 DNA-binding protein, putative. (357 aa)    
Predicted Functional Partners:
ACI57127.1
KEGG: nha:Nham_3356 hypothetical protein.
  
    0.818
ACI54804.1
KEGG: vei:Veis_2854 hypothetical protein.
  
 
 
 0.514
ACI55731.1
PFAM: peptidase S24 and S26 domain protein; KEGG: xau:Xaut_3612 putative prophage repressor; Belongs to the peptidase S24 family.
  
  
 0.513
ACI57125.1
KEGG: rec:RHECIAT_CH0004266 hypothetical protein.
       0.503
ACI57289.1
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_CH0000098 probable transcriptional regulator protein, MerR family.
  
  
 0.491
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.463
ACI57126.1
KEGG: rec:RHECIAT_CH0004265 hypothetical protein.
  
    0.427
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.