STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI57174.1Pyridoxal kinase; KEGG: rec:RHECIAT_CH0004395 pyridoxine kinase protein; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; Belongs to the pyridoxine kinase family. (291 aa)    
Predicted Functional Partners:
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
    
 0.919
ACI53397.1
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_PC0000011 putative pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
    
 0.917
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
 0.902
ACI53406.1
PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00449 probable oxidoreductase protein.
     
  0.900
ACI57185.1
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.690
ACI57173.1
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.622
ACI55217.1
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002394 probable transcriptional regulator protein, GntR family.
 
  
 0.549
ACI54205.1
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_CH0001372 putative pyridoxine 5'-phosphate oxidase protein.
     
  0.499
ACI56096.1
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_CH0003246 hypothetical protein.
     
  0.499
ACI54473.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.482
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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