STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0008PFAM: HpcH/HpaI aldolase; KEGG: mmb:Mmol_0762 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (376 aa)    
Predicted Functional Partners:
Galf_0006
Citryl-CoA lyase; Manually curated; KEGG: mmb:Mmol_0753 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
  0.985
Galf_0004
PFAM: HpcH/HpaI aldolase; KEGG: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
  0.973
Galf_0009
PFAM: AMP-dependent synthetase and ligase; KEGG: AMP-dependent synthetase and ligase.
 
   
 0.901
Galf_0005
PFAM: MaoC domain protein dehydratase; KEGG: MaoC domain protein dehydratase.
 
  
 0.848
Galf_0619
PFAM: class II aldolase/adducin family protein; KEGG: mei:Msip34_0855 class II aldolase/adducin family protein.
  
    0.738
Galf_0007
KEGG: mmb:Mmol_0754 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH.
 
   
 0.687
Galf_0411
KEGG: slt:Slit_2542 hypothetical protein.
  
  
 0.520
Galf_1175
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.513
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.