STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0211PFAM: Peptidase M23; KEGG: slt:Slit_2621 peptidase M23. (385 aa)    
Predicted Functional Partners:
Galf_0459
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.970
Galf_0210
TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: slt:Slit_2622 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
 
  
 0.892
Galf_1213
KEGG: alv:Alvin_2436 hypothetical protein.
  
   0.835
Galf_1214
KEGG: alv:Alvin_2435 hypothetical protein.
   
   0.834
Galf_0208
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: slt:Slit_2669 UBA/ThiF-type NAD/FAD binding protein.
  
    0.811
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.800
Galf_0209
KEGG: slt:Slit_2623 hypothetical protein.
       0.747
Galf_2531
PFAM: peptidase M48 Ste24p; KEGG: slt:Slit_2417 peptidase M48 Ste24p.
 
 
 
 0.712
Galf_0016
KEGG: lhk:LHK_00064 CheY-like receiver; PFAM: response regulator receiver; Tetratricopeptide TPR_1 repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat.
   
 
 0.625
Galf_1778
KEGG: slt:Slit_1202 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; Tetratricopeptide repeat.
   
 
 0.621
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.