STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0237KEGG: slt:Slit_2595 putative mannose-sensitive agglutinin (MSHA). (218 aa)    
Predicted Functional Partners:
Galf_0239
PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: slt:Slit_2593 type II and III secretion system protein.
 
  
 0.955
Galf_0235
KEGG: slt:Slit_2597 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshI.
 
   
 0.953
Galf_0236
PFAM: Fimbrial assembly family protein; KEGG: slt:Slit_2596 putative mannose-sensitive agglutinin (MSHA).
 
   
 0.953
Galf_0241
KEGG: slt:Slit_2591 TPR repeat-containing protein.
 
     0.919
Galf_0232
KEGG: slt:Slit_2601 hypothetical protein.
 
  
 0.909
Galf_0230
KEGG: tbd:Tbd_0755 general secretion pathway protein H.
 
  
 0.907
Galf_0231
KEGG: slt:Slit_2602 hypothetical protein.
 
  
 0.907
Galf_0234
KEGG: hypothetical protein.
 
     0.902
Galf_0233
KEGG: slt:Slit_2600 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshP; putative signal peptide.
 
     0.898
Galf_0240
KEGG: slt:Slit_2592 general secretion pathway protein, ATPase.
 
    0.897
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.