STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0472KEGG: slt:Slit_2360 putative ABC-2 type transport system permease protein. (247 aa)    
Predicted Functional Partners:
Galf_0473
KEGG: mfa:Mfla_0682 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.991
Galf_0471
PFAM: ABC-type uncharacterized transport system; KEGG: slt:Slit_2361 ABC-type uncharacterized transport system.
  
 0.962
Galf_0916
KEGG: cag:Cagg_1431 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.842
Galf_2737
KEGG: slt:Slit_2818 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.836
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.800
Galf_0474
KEGG: slt:Slit_2357 TPR repeat-containing protein.
 
     0.665
Galf_0467
PFAM: protein of unknown function DUF167; KEGG: gem:GM21_2508 protein of unknown function DUF167; Belongs to the UPF0235 family.
       0.590
Galf_0469
Metal dependent phosphohydrolase; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: metal-dependent phosphohydrolase HD sub domain; Hemerythrin HHE cation binding domain protein; KEGG: pat:Patl_2248 response regulator receiver modulated metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein.
  
    0.585
Galf_0468
PFAM: phosphoesterase; KEGG: slt:Slit_2927 phosphoesterase.
       0.577
Galf_0475
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
       0.544
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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