STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0670PFAM: glycosyl transferase family 2; KEGG: slt:Slit_1372 glycosyl transferase family 2. (314 aa)    
Predicted Functional Partners:
Galf_0673
PFAM: polysaccharide deacetylase; KEGG: slt:Slit_1375 polysaccharide deacetylase.
 
 
 0.995
Galf_0672
PFAM: NAD-dependent epimerase/dehydratase; KEGG: slt:Slit_1374 NAD-dependent epimerase/dehydratase.
 
 
 0.992
Galf_0666
PFAM: glycosyl transferase family 39; KEGG: slt:Slit_1368 glycosyl transferase family 39.
 
  
 0.966
Galf_0671
PFAM: formyl transferase domain protein; KEGG: slt:Slit_1373 formyl transferase domain protein.
 
  
 0.917
Galf_0667
PFAM: small multidrug resistance protein; KEGG: slt:Slit_1369 protein of unknown function DUF6 transmembrane.
 
  
 0.903
Galf_0668
KEGG: slt:Slit_1370 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.877
Galf_0669
KEGG: slt:Slit_2199 radical SAM domain protein; Belongs to the radical SAM superfamily. RlmN family.
       0.618
Galf_2848
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pin:Ping_0775 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.581
Galf_1292
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: vex:VEA_001326 capsular polysaccharide synthesis enzyme CpsA sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.541
Galf_0665
PFAM: Methyltransferase type 11; KEGG: nmu:Nmul_A0287 generic methyltransferase.
 
    0.538
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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