STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0800PFAM: Citrate transporter; KEGG: dar:Daro_0683 Na+/H+ antiporter. (427 aa)    
Predicted Functional Partners:
Galf_0799
PFAM: protein of unknown function DUF389; KEGG: slt:Slit_0917 hypothetical protein.
       0.608
Galf_0274
Potassium efflux system protein; KEGG: slt:Slit_0442 sodium/hydrogen exchanger; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.510
Galf_1728
PFAM: arsenate reductase and related; KEGG: mei:Msip34_0931 arsenate reductase and related; Belongs to the ArsC family.
     
 0.457
Galf_2395
Arsenite-activated ATPase ArsA; Anion-transporting ATPase; Belongs to the arsA ATPase family.
     
 0.441
Galf_2569
KEGG: mag:amb3437 hypothetical protein; PFAM: domain of unknown function DUF1745; FIST C domain; SMART: domain of unknown function DUF1745.
  
     0.429
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.417
Galf_0764
KEGG: dfe:Dfer_3322 domain of unknown function DUF1745; PFAM: domain of unknown function DUF1745; FIST C domain; SMART: domain of unknown function DUF1745.
  
     0.414
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.405
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
    0.400
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.