STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0899KEGG: rcu:RCOM_2051300 hypothetical protein. (487 aa)    
Predicted Functional Partners:
Galf_0900
KEGG: bid:Bind_2001 hypothetical protein.
 
     0.952
Galf_0901
KEGG: fjo:Fjoh_3657 hypothetical protein.
 
     0.946
Galf_0902
KEGG: dfe:Dfer_4058 TonB family protein.
       0.773
Galf_0898
KEGG: bur:Bcep18194_C6602 hypothetical protein.
       0.713
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.686
Galf_0897
KEGG: xau:Xaut_0561 hypothetical protein.
       0.642
Galf_0891
PFAM: SMC domain protein; KEGG: pfo:Pfl01_2290 hypothetical protein.
  
    0.590
Galf_0374
PFAM: SEFIR domain protein; KEGG: shm:Shewmr7_1857 SEFIR domain-containing protein.
 
     0.467
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: slt:Slit_2610 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
   0.426
Galf_0392
KEGG: slt:Slit_0402 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein.
    
   0.422
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.