STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0940KEGG: bvi:Bcep1808_6737 hypothetical protein. (394 aa)    
Predicted Functional Partners:
Galf_0941
KEGG: ajs:Ajs_4173 hypothetical protein; TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC.
       0.776
Galf_0942
PFAM: TraU family protein; KEGG: bcj:pBCA031 putative TraU conjugative transfer protein precursor.
       0.776
Galf_0938
KEGG: mpt:Mpe_B0383 hypothetical protein.
       0.773
Galf_0939
KEGG: bvi:Bcep1808_6736 conjugal transfer mating pair stabilization protein TraN.
       0.773
Galf_0943
TIGRFAM: type-F conjugative transfer system protein TraW; KEGG: dar:Daro_2324 hypothetical protein.
       0.773
Galf_0936
KEGG: hna:Hneap_0280 hypothetical protein.
       0.506
Galf_0937
PFAM: Protein of unknown function DUF3423; KEGG: net:Neut_1817 hypothetical protein.
       0.506
Galf_0944
PFAM: Relaxase; KEGG: pmr:PMI2476 plasmid conjugative relaxase.
       0.452
Galf_0945
PFAM: Peptidase S26, conserved region; KEGG: bch:Bcen2424_6803 type IV secretory pathway protease TraF-like protein.
       0.452
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.