STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0962Hypothetical protein; Manually curated; KEGG: mkm:Mkms_5793 hypothetical protein. (302 aa)    
Predicted Functional Partners:
Galf_0963
Beta-xylosidase; KEGG: blj:BLD_1543 beta-xylosidase.
       0.773
Galf_0964
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; helix-turn-helix Fis-type; KEGG: eba:p1B79 hypothetical protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
     0.633
Galf_0961
KEGG: bvi:Bcep1808_7021 hypothetical protein.
       0.603
Galf_0959
KEGG: slt:Slit_0752 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family.
       0.479
Galf_0960
KEGG: sbi:SORBI_03g046350 hypothetical protein.
       0.454
Galf_0965
TIGRFAM: PRTRC system protein E; KEGG: hypothetical protein.
       0.419
Galf_0966
KEGG: rpf:Rpic12D_5240 hypothetical protein.
  
    0.403
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.