STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0970PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_5068 UBA/ThiF-type NAD/FAD binding fold. (275 aa)    
Predicted Functional Partners:
Galf_0968
KEGG: eba:p1B75 hypothetical protein.
 
     0.934
Galf_0208
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: slt:Slit_2669 UBA/ThiF-type NAD/FAD binding protein.
  
 0.923
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
    
 0.907
Galf_0966
KEGG: rpf:Rpic12D_5240 hypothetical protein.
 
     0.874
Galf_0969
PFAM: Domain of unknown function DUF2016; KEGG: eba:p1B74 hypothetical protein.
  
    0.727
Galf_0967
KEGG: eba:p1B76 hypothetical protein.
       0.698
Galf_0964
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; helix-turn-helix Fis-type; KEGG: eba:p1B79 hypothetical protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
     0.490
Galf_1266
PFAM: polysaccharide export protein; protein of unknown function DUF1017; Soluble ligand binding domain; KEGG: aba:Acid345_2732 polysaccharide export protein.
  
     0.455
Galf_0965
TIGRFAM: PRTRC system protein E; KEGG: hypothetical protein.
       0.446
Galf_1613
PFAM: PilT protein domain protein; KEGG: nhl:Nhal_2022 PilT protein domain protein.
  
     0.418
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.