Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Galf_0973 | Galf_0974 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | KEGG: bxe:Bxe_C1366 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | 0.916 |
Galf_0973 | Galf_0996 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | 0.646 |
Galf_0973 | Galf_1002 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | 0.646 |
Galf_0973 | Galf_1479 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | AAA ATPase; KEGG: app:CAP2UW1_1395 hypothetical protein; manually curated; SMART: AAA ATPase. | 0.449 |
Galf_0973 | Galf_1524 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | PFAM: HipA domain protein; KEGG: app:CAP2UW1_2145 HipA domain protein. | 0.458 |
Galf_0973 | Galf_1664 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | KEGG: pph:Ppha_0746 hypothetical protein. | 0.449 |
Galf_0973 | Galf_1839 | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | PFAM: HipA domain protein; KEGG: alv:Alvin_0433 HipA domain protein. | 0.432 |
Galf_0974 | Galf_0973 | KEGG: bxe:Bxe_C1366 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.916 |
Galf_0996 | Galf_0973 | KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.646 |
Galf_1002 | Galf_0973 | KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.646 |
Galf_1002 | Galf_1524 | KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | PFAM: HipA domain protein; KEGG: app:CAP2UW1_2145 HipA domain protein. | 0.400 |
Galf_1479 | Galf_0973 | AAA ATPase; KEGG: app:CAP2UW1_1395 hypothetical protein; manually curated; SMART: AAA ATPase. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.449 |
Galf_1524 | Galf_0973 | PFAM: HipA domain protein; KEGG: app:CAP2UW1_2145 HipA domain protein. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.458 |
Galf_1524 | Galf_1002 | PFAM: HipA domain protein; KEGG: app:CAP2UW1_2145 HipA domain protein. | KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein. | 0.400 |
Galf_1664 | Galf_0973 | KEGG: pph:Ppha_0746 hypothetical protein. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.449 |
Galf_1839 | Galf_0973 | PFAM: HipA domain protein; KEGG: alv:Alvin_0433 HipA domain protein. | Helix-turn-helix domain protein; KEGG: bph:Bphy_5530 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. | 0.432 |