STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0997KEGG: tmz:Tmz1t_2397 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Galf_0995
KEGG: sat:SYN_02733 helix-turn-helix DNA binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
    0.772
Galf_0996
KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
       0.610
hisS
TIGRFAM: histidyl-tRNA synthetase; KEGG: slt:Slit_1415 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
  
 0.581
Galf_1139
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase, type II; KEGG: slt:Slit_2065 chorismate mutase; SMART: Chorismate mutase.
   
   0.525
Galf_0844
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: lch:Lcho_1138 oxidoreductase FAD/NAD(P)-binding subunit.
   
 
 0.519
Galf_0998
KEGG: vha:VIBHAR_01109 hypothetical protein.
       0.517
Galf_0999
KEGG: gur:Gura_2915 hypothetical protein.
       0.517
Galf_1000
KEGG: neu:NE2539 hypothetical protein.
       0.517
Galf_1395
KEGG: neu:NE0147 hypothetical protein.
  
    0.438
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.426
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.