STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1099PFAM: glycosyl transferase family 9; KEGG: glo:Glov_3383 glycosyl transferase family 9. (321 aa)    
Predicted Functional Partners:
Galf_0514
KEGG: slt:Slit_2100 lipopolysaccharide heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9.
 
 
0.956
Galf_2825
KEGG: pfs:PFLU0463 lipopolysaccharide heptosyltransferase-1; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9.
  
  
  0.932
Galf_2811
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.919
Galf_2819
PFAM: O-antigen polymerase; KEGG: slt:Slit_2875 O-antigen polymerase.
  
 
 0.917
Galf_2820
KEGG: slt:Slit_2876 glycosyl transferase group 1; manually curated; PFAM: glycosyl transferase group 1.
  
 
 0.904
Galf_0466
KEGG: slt:Slit_2364 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
   0.779
Galf_1098
PFAM: Radical SAM domain protein; KEGG: geo:Geob_0670 radical SAM domain protein.
       0.774
Galf_1097
KEGG: gbm:Gbem_3387 Radical SAM domain protein; PFAM: cobalamin B12-binding domain protein; Ribulose bisphosphate carboxylase, large subunit-like; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.773
Galf_0199
PFAM: glycosyl transferase family 9; KEGG: slt:Slit_0315 glycosyl transferase family 9.
 
  
 0.708
Galf_1094
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO5178 putative short-chain dehydrogenase/reductase family protein.
   
 
 0.708
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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