STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1180PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: slt:Slit_1269 putative adenylate/guanylate cyclase. (432 aa)    
Predicted Functional Partners:
Galf_1402
Putative transcriptional regulator, Crp/Fnr family; KEGG: slt:Slit_1404 cyclic nucleotide-regulated small mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
 
 
 
 0.778
Galf_0201
PFAM: glycosyl transferase family 39; KEGG: slt:Slit_0317 glycosyl transferase family 39.
  
     0.772
Galf_2304
PFAM: PEGA domain protein; KEGG: slt:Slit_0749 PEGA domain protein.
  
     0.772
Galf_0431
KEGG: slt:Slit_0264 hypothetical protein.
  
     0.766
Galf_2198
KEGG: slt:Slit_2287 hypothetical protein.
  
     0.766
Galf_1162
PFAM: Protein of unknown function DUF3240; KEGG: slt:Slit_1972 hypothetical protein.
  
     0.758
Galf_2361
KEGG: slt:Slit_2386 hypothetical protein.
  
     0.757
Galf_1161
PFAM: outer membrane efflux protein; KEGG: slt:Slit_1973 outer membrane efflux protein.
  
     0.753
Galf_1132
KEGG: tva:TVAG_413070 hypothetical protein.
  
     0.751
Galf_0219
PFAM: O-antigen polymerase; KEGG: slt:Slit_2615 O-antigen polymerase.
  
     0.737
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.