STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (387 aa)    
Predicted Functional Partners:
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.995
Galf_1270
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: pol:Bpro_4942 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase.
 
 
 0.979
Galf_1292
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: vex:VEA_001326 capsular polysaccharide synthesis enzyme CpsA sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.966
gmd-2
NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 
0.927
Galf_1165
PFAM: Nucleotidyl transferase; KEGG: azo:azo2231 putative mannose-1-phosphate guanylyltransferase.
    
 0.907
Galf_1271
PFAM: DNA polymerase beta domain protein region; KEGG: lch:Lcho_2332 DNA polymerase beta subunit.
       0.615
Galf_1272
PFAM: protein of unknown function DUF86; KEGG: pph:Ppha_1588 protein of unknown function DUF86.
       0.601
Galf_1090
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cbs:COXBURSA331_A0799 NAD-dependent epimerase/dehydratase family protein.
 
 
 0.594
Galf_1274
KEGG: pha:PSHAa0448 hypothetical protein.
       0.557
Galf_1276
PFAM: polysaccharide biosynthesis protein; KEGG: afw:Anae109_1814 polysaccharide biosynthesis protein.
  
  
 0.508
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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