Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Galf_0723 | Galf_1542 | Galf_0723 | Galf_1542 | PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A2182 phage transcriptional regulator, AlpA. | KEGG: nmu:Nmul_A1560 hypothetical protein. | 0.430 |
Galf_1540 | Galf_1542 | Galf_1540 | Galf_1542 | TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: slt:Slit_1493 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | KEGG: nmu:Nmul_A1560 hypothetical protein. | 0.773 |
Galf_1540 | rlmJ | Galf_1540 | Galf_1543 | TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: slt:Slit_1493 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.639 |
Galf_1540 | uvrC | Galf_1540 | Galf_1541 | TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: slt:Slit_1493 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.845 |
Galf_1542 | Galf_0723 | Galf_1542 | Galf_0723 | KEGG: nmu:Nmul_A1560 hypothetical protein. | PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A2182 phage transcriptional regulator, AlpA. | 0.430 |
Galf_1542 | Galf_1540 | Galf_1542 | Galf_1540 | KEGG: nmu:Nmul_A1560 hypothetical protein. | TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: slt:Slit_1493 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.773 |
Galf_1542 | rlmJ | Galf_1542 | Galf_1543 | KEGG: nmu:Nmul_A1560 hypothetical protein. | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.636 |
Galf_1542 | uvrC | Galf_1542 | Galf_1541 | KEGG: nmu:Nmul_A1560 hypothetical protein. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.773 |
rlmJ | Galf_1540 | Galf_1543 | Galf_1540 | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: slt:Slit_1493 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.639 |
rlmJ | Galf_1542 | Galf_1543 | Galf_1542 | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | KEGG: nmu:Nmul_A1560 hypothetical protein. | 0.636 |
rlmJ | uvrC | Galf_1543 | Galf_1541 | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.646 |
uvrC | Galf_1540 | Galf_1541 | Galf_1540 | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: slt:Slit_1493 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.845 |
uvrC | Galf_1542 | Galf_1541 | Galf_1542 | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | KEGG: nmu:Nmul_A1560 hypothetical protein. | 0.773 |
uvrC | rlmJ | Galf_1541 | Galf_1543 | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.646 |