STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1576KEGG: rso:RSc2693 putative outer membrane usher transmembrane protein; manually curated; PFAM: fimbrial biogenesis outer membrane usher protein. (778 aa)    
Predicted Functional Partners:
Galf_1577
PFAM: Pili assembly chaperone, N-terminal; KEGG: rso:RSc2694 putative pili assembly chaperone transmembrane protein.
 
 
 0.997
Galf_1575
PFAM: Spore coat protein U; KEGG: aeh:Mlg_0777 spore coat U domain-containing protein.
 
  
 0.953
Galf_1578
PFAM: Spore coat protein U; KEGG: afr:AFE_0005 spore coat protein.
 
  
 0.939
Galf_0318
KEGG: hor:Hore_02400 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
   
    0.528
leuS
KEGG: dar:Daro_0544 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
   0.508
Galf_1573
(NiFe) hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
       0.495
Galf_1574
KEGG: slt:Slit_2424 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K.
       0.495
Galf_1381
KEGG: slt:Slit_1541 CoA-binding domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; GCN5-related N-acetyltransferase; SMART: CoA-binding domain protein.
    
 
 0.473
Galf_1437
PFAM: Hemolysin-type calcium-binding region; KEGG: nmi:NMO_1247 FrpA/C-related protein.
   
  
 0.446
Galf_1442
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Ig family protein; Hemolysin-type calcium-binding region; KEGG: ppd:Ppro_2370 Ig family protein; SMART: Dystroglycan-type cadherin domain protein.
   
  
 0.446
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.