STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1587KEGG: slt:Slit_2796 YecA family protein; TIGRFAM: yecA family protein; PFAM: uncharacterized protein family UPF0149 (YgfB); SEC-C motif domain protein. (244 aa)    
Predicted Functional Partners:
Galf_1588
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: TonB-dependent receptor.
       0.773
Galf_1586
KEGG: ddf:DEFDS_0831 hypothetical protein.
       0.618
Galf_1589
Hypothetical protein; KEGG: dwi:Dwil_GK10816 GK10816 gene product from transcript GK10816-RA.
       0.482
Galf_1590
KEGG: pyo:PY04960 hypothetical protein.
       0.482
Galf_2285
KEGG: rcu:RCOM_2063810 hypothetical protein.
  
     0.461
Galf_2919
KEGG: mms:mma_3451 hypothetical protein.
  
     0.405
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.