STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1645KEGG: slt:Slit_1334 hypothetical protein. (55 aa)    
Predicted Functional Partners:
Galf_1646
KEGG: mei:Msip34_1876 hypothetical protein.
       0.732
Galf_1647
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mfa:Mfla_2634 extradiol ring-cleavage dioxygenase III subunit B.
       0.732
Galf_1644
KEGG: dol:Dole_2191 formate C-acetyltransferase; PFAM: pyruvate formate-lyase PFL.
       0.517
Galf_1642
(Formate-C-acetyltransferase)-activating enzyme; KEGG: dol:Dole_2192 glycyl-radical activating family protein; PFAM: Radical SAM domain protein.
       0.479
Galf_1643
KEGG: pen:PSEEN3180 hypothetical protein.
       0.479
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.