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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1663KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system. (72 aa)    
Predicted Functional Partners:
Galf_1003
KEGG: sjp:SJA_P1-00300 RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin.
 
 
 0.831
Galf_1350
PFAM: helix-turn-helix domain protein; Bacteriophage phi-Lf, Orf112; KEGG: neu:NE0896 helix-hairpin-helix DNA-binding motif-containing protein.
   
 
 0.716
Galf_1173
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.614
Galf_2610
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.614
Galf_1664
KEGG: pph:Ppha_0746 hypothetical protein.
       0.538
Galf_1665
KEGG: hypothetical protein.
       0.538
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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