node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Galf_0002 | Galf_0043 | Galf_0002 | Galf_0043 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | 0.817 |
Galf_0002 | Galf_0140 | Galf_0002 | Galf_0140 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.840 |
Galf_0002 | Galf_1432 | Galf_0002 | Galf_1432 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | 0.975 |
Galf_0002 | dut | Galf_0002 | Galf_2303 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.876 |
Galf_0002 | ung | Galf_0002 | Galf_1743 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.761 |
Galf_0043 | Galf_0002 | Galf_0043 | Galf_0002 | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.817 |
Galf_0043 | Galf_0140 | Galf_0043 | Galf_0140 | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.923 |
Galf_0043 | Galf_1432 | Galf_0043 | Galf_1432 | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | 0.452 |
Galf_0043 | nth | Galf_0043 | Galf_2369 | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.981 |
Galf_0043 | ung | Galf_0043 | Galf_1743 | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.645 |
Galf_0140 | Galf_0002 | Galf_0140 | Galf_0002 | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.840 |
Galf_0140 | Galf_0043 | Galf_0140 | Galf_0043 | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | 0.923 |
Galf_0140 | Galf_1432 | Galf_0140 | Galf_1432 | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | 0.452 |
Galf_0140 | nth | Galf_0140 | Galf_2369 | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.909 |
Galf_0140 | ung | Galf_0140 | Galf_1743 | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.645 |
Galf_1432 | Galf_0002 | Galf_1432 | Galf_0002 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.975 |
Galf_1432 | Galf_0043 | Galf_1432 | Galf_0043 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: mei:Msip34_2527 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. | 0.452 |
Galf_1432 | Galf_0140 | Galf_1432 | Galf_0140 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | KEGG: slt:Slit_2928 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.452 |
Galf_1432 | nth | Galf_1432 | Galf_2369 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.420 |
Galf_1432 | ung | Galf_1432 | Galf_1743 | TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; UvrD/REP helicase; KEGG: pau:PA14_28810 putative DNA helicase; SMART: helicase domain protein; DEAD-like helicase. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.503 |