STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1822PFAM: protein of unknown function DUF498; KEGG: slt:Slit_2220 protein of unknown function DUF498. (162 aa)    
Predicted Functional Partners:
Galf_1403
KEGG: slt:Slit_1403 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
 
     0.652
Galf_0192
PFAM: protein of unknown function DUF185; KEGG: slt:Slit_0167 protein of unknown function DUF185.
  
     0.625
Galf_0515
PFAM: Zinc finger, CHCC-type; KEGG: slt:Slit_2099 zinc finger, CHCC-type.
  
     0.620
Galf_1821
KEGG: slt:Slit_2219 aminotransferase class I and II; manually curated; PFAM: aminotransferase class I and II.
       0.579
Galf_1823
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: slt:Slit_2221 ATPase associated with various cellular activities AAA_3.
       0.564
Galf_1824
PFAM: protein of unknown function DUF58; KEGG: slt:Slit_2222 protein of unknown function DUF58.
       0.561
Galf_1825
Protein of unknown function DUF3488; KEGG: slt:Slit_2223 transglutaminase domain protein; PFAM: Protein of unknown function DUF3488; transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
       0.561
Galf_2372
PFAM: Domain of unknown function DUF1841; KEGG: slt:Slit_2398 domain of unknown function DUF1841.
  
     0.557
Galf_1826
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: slt:Slit_2224 6-pyruvoyl tetrahydropterin synthase and hypothetical protein.
       0.516
bioC
Biotin biosynthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
     0.511
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.