STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1984Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: slt:Slit_1030 transcriptional regulator, LysR family. (313 aa)    
Predicted Functional Partners:
Galf_1979
Adenylylsulfate reductase, thioredoxin dependent; Reduction of activated sulfate into sulfite.
 
   
 0.628
Galf_1983
PFAM: protein of unknown function DUF81; KEGG: slt:Slit_1031 protein of unknown function DUF81.
 
     0.621
Galf_1981
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: mms:mma_2452 sulfite reductase (NADPH) hemoprotein beta-component.
     
 0.576
Galf_1980
PFAM: uncharacterized conserved protein UCP030820; KEGG: mms:mma_2453 hypothetical protein.
       0.546
Galf_1982
KEGG: ptr:736455 hypothetical protein LOC736455.
       0.542
Galf_1985
KEGG: dar:Daro_0041 hypothetical protein.
       0.536
Galf_0174
KEGG: slt:Slit_0115 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.518
Galf_1978
TIGRFAM: sulfate adenylyltransferase, small subunit; KEGG: slt:Slit_1034 sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase.
     
 0.496
Galf_1977
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.492
Galf_0318
KEGG: hor:Hore_02400 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA-like domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.467
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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