STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2065KEGG: slt:Slit_2079 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (224 aa)    
Predicted Functional Partners:
Galf_2067
PFAM: protein of unknown function DUF214; KEGG: slt:Slit_2077 protein of unknown function DUF214.
 
 0.997
Galf_2066
PFAM: protein of unknown function DUF214; KEGG: slt:Slit_2078 protein of unknown function DUF214.
 
 0.996
Galf_1762
PFAM: protein of unknown function DUF214; KEGG: app:CAP2UW1_1978 protein of unknown function DUF214.
 
 0.988
Galf_2064
KEGG: slt:Slit_2080 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.952
Galf_0402
PFAM: protein of unknown function DUF214; KEGG: mth:MTH695 hypothetical protein.
 
 0.940
Galf_1675
Manually curated; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: slt:Slit_1402 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
 
 
 0.790
Galf_2489
PFAM: protein of unknown function DUF214; KEGG: slt:Slit_1134 protein of unknown function DUF214.
  
 
 0.767
Galf_1760
KEGG: app:CAP2UW1_1980 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.737
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.665
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
 
 
 0.513
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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