STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2190PFAM: Protein of unknown function DUF2798; KEGG: rfr:Rfer_3643 hypothetical protein. (77 aa)    
Predicted Functional Partners:
Galf_2189
KEGG: tmz:Tmz1t_0071 hypothetical protein.
       0.645
Galf_2220
KEGG: slt:Slit_1988 putative integral membrane protein.
  
     0.522
Galf_2191
Helix-turn-helix domain protein; KEGG: bmj:BMULJ_02329 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.446
Galf_2192
PFAM: protein of unknown function DUF891; KEGG: afr:AFE_1384 hypothetical protein.
       0.446
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.