STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2214PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slt:Slit_1982 binding-protein-dependent transport systems inner membrane component. (431 aa)    
Predicted Functional Partners:
Galf_2215
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slt:Slit_1983 binding-protein-dependent transport systems inner membrane component.
 
 0.999
Galf_2213
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: slt:Slit_1981 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.998
Galf_2216
PFAM: extracellular solute-binding protein family 5; KEGG: nhl:Nhal_0798 extracellular solute-binding protein family 5.
 
  
 0.960
Galf_2211
KEGG: slt:Slit_1979 protein of unknown function DUF2311, membrane.
       0.551
Galf_2210
KEGG: slt:Slit_1978 hypothetical protein.
       0.548
Galf_2212
PFAM: protein of unknown function DUF883 ElaB; KEGG: slt:Slit_1980 protein of unknown function DUF883 ElaB.
       0.548
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
  
 0.421
Galf_1270
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: pol:Bpro_4942 mannose-1-phosphate guanylyltransferase (GDP); PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase.
     
 0.419
Galf_1869
TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; PAS fold domain protein; KEGG: rfr:Rfer_2480 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3.
  
  
 0.403
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.400
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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