STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2220KEGG: slt:Slit_1988 putative integral membrane protein. (222 aa)    
Predicted Functional Partners:
Galf_2219
KEGG: slt:Slit_1987 folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
       0.782
Galf_0249
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: slt:Slit_2584 hypothetical protein.
  
     0.591
Galf_2218
Adenylate/guanylate cyclase; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: slt:Slit_2071 adenylate/guanylate cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
       0.584
Galf_2190
PFAM: Protein of unknown function DUF2798; KEGG: rfr:Rfer_3643 hypothetical protein.
  
     0.522
Galf_2217
KEGG: hypothetical protein.
       0.461
Galf_1161
PFAM: outer membrane efflux protein; KEGG: slt:Slit_1973 outer membrane efflux protein.
  
     0.451
Galf_0219
PFAM: O-antigen polymerase; KEGG: slt:Slit_2615 O-antigen polymerase.
  
     0.439
Galf_1646
KEGG: mei:Msip34_1876 hypothetical protein.
  
     0.423
Galf_0428
PFAM: porin Gram-negative type; KEGG: slt:Slit_2478 porin gram-negative type.
  
     0.422
Galf_0263
Cytochrome c class I; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
     0.415
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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