node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Galf_2108 | Galf_2352 | Galf_2108 | Galf_2352 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | 0.766 |
Galf_2108 | rplB | Galf_2108 | Galf_0561 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.643 |
Galf_2108 | rplC | Galf_2108 | Galf_0558 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.734 |
Galf_2108 | rplE | Galf_2108 | Galf_0570 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.693 |
Galf_2108 | rplS | Galf_2108 | Galf_2708 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.726 |
Galf_2108 | rplV | Galf_2108 | Galf_0563 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.642 |
Galf_2108 | rplW | Galf_2108 | Galf_0560 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.640 |
Galf_2108 | rplY | Galf_2108 | Galf_0478 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.668 |
Galf_2108 | rpmG | Galf_2108 | Galf_2278 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | KEGG: mmb:Mmol_0376 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.649 |
Galf_2108 | rsfS | Galf_2108 | Galf_2673 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.740 |
Galf_2352 | Galf_2108 | Galf_2352 | Galf_2108 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.766 |
Galf_2352 | rplB | Galf_2352 | Galf_0561 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.647 |
Galf_2352 | rplC | Galf_2352 | Galf_0558 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.651 |
Galf_2352 | rplE | Galf_2352 | Galf_0570 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.647 |
Galf_2352 | rplS | Galf_2352 | Galf_2708 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.647 |
Galf_2352 | rplV | Galf_2352 | Galf_0563 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.690 |
Galf_2352 | rplW | Galf_2352 | Galf_0560 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.653 |
Galf_2352 | rplY | Galf_2352 | Galf_0478 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.648 |
Galf_2352 | rpmG | Galf_2352 | Galf_2278 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | KEGG: mmb:Mmol_0376 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.760 |
Galf_2352 | rsfS | Galf_2352 | Galf_2673 | PFAM: protein of unknown function DUF615; KEGG: slt:Slit_2379 protein of unknown function DUF615; Belongs to the UPF0307 family. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.655 |