STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2411PFAM: transposase IS3/IS911 family protein; KEGG: rpf:Rpic12D_2977 transposase IS3/IS911 family protein. (120 aa)    
Predicted Functional Partners:
Galf_2412
PFAM: IS66 Orf2 family protein; KEGG: hna:Hneap_2256 IS66 Orf2 family protein.
 
   
 0.851
Galf_2413
Transposase; KEGG: eba:ebA5523 transposase.
 
   
 0.714
Galf_2459
PFAM: Protein of unknown function DUF2242; KEGG: xal:XALc_0822 hypothetical protein.
  
     0.577
Galf_1736
KEGG: bxe:Bxe_B1988 hypothetical protein.
  
     0.415
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.