STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2473PFAM: cytochrome c class I; KEGG: mca:MCA2401 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Galf_2472
KEGG: mca:MCA2400 nitric-oxide reductase, B subunit, putative; PFAM: cytochrome c oxidase subunit I.
 
 0.999
Galf_0769
KEGG: mca:MCA2400 nitric-oxide reductase, B subunit, putative; PFAM: cytochrome c oxidase subunit I.
 
 0.997
Galf_0768
PFAM: cytochrome c class I; KEGG: mca:MCA2401 hypothetical protein.
  
  
 
0.901
Galf_0035
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: slt:Slit_0023 CbbQ/NirQ/NorQ domain protein.
 
  
 0.882
Galf_0036
KEGG: slt:Slit_0024 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
  
 0.861
Galf_0261
KEGG: slt:Slit_0412 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
  
 
 0.846
Galf_2481
PFAM: cytochrome c oxidase subunit I; KEGG: eba:ebA3666 cytochrome c oxidase, subunit I.
 
 
 0.844
Galf_2482
PFAM: cytochrome c oxidase subunit II; KEGG: eba:ebA3665 cytochrome-c oxidase subunit II.
 
 
 0.844
Galf_0260
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: slt:Slit_0411 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.833
Galf_1617
KEGG: mmb:Mmol_1047 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: cyclic nucleotide-binding.
  
 
 0.785
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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