STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2620KEGG: aeh:Mlg_0782 cytochrome c biogenesis protein, transmembrane region. (226 aa)    
Predicted Functional Partners:
Galf_2623
KEGG: tdn:Suden_0274 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.947
Galf_2622
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: aeh:Mlg_0785 2-hydroxyglutaryl-CoA dehydratase, D-component.
 
     0.897
Galf_2621
TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: aeh:Mlg_0786 putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
     0.864
Galf_2624
PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: aeh:Mlg_0783 polyferredoxin-like protein.
       0.783
Galf_2625
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slt:Slit_1130 TonB-dependent receptor.
 
     0.608
Galf_2619
KEGG: pmy:Pmen_4555 PepSY-associated TM helix domain-containing protein.
       0.563
Galf_2617
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
       0.405
Galf_2618
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo1830 putative TonB-denpendent receptor.
       0.405
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.