STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2682TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: slt:Slit_2759 twitching motility protein; SMART: AAA ATPase. (347 aa)    
Predicted Functional Partners:
Galf_0292
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.861
Galf_0293
PFAM: Type II secretion system F domain; KEGG: slt:Slit_2699 type II secretion system F domain protein.
 
  
 0.804
Galf_0227
PFAM: Type II secretion system F domain; KEGG: slt:Slit_2607 type II secretion system F domain protein.
 
  
 0.802
Galf_2315
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
 
  
 0.800
Galf_0158
KEGG: slt:Slit_0108 type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA.
 
   
 0.777
Galf_0162
KEGG: slt:Slit_0112 type IV pilus secretin PilQ; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Localisation of periplasmic protein complexes; Secretin/TonB short domain.
 
   
 0.706
Galf_2683
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: slt:Slit_2760 twitching motility protein; SMART: AAA ATPase.
 
  
0.672
Galf_0160
KEGG: slt:Slit_0110 pilus assembly protein PilO.
 
  
 0.627
Galf_2681
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.609
Galf_0171
KEGG: tmz:Tmz1t_2663 type IV pilus biogenesis protein PilE.
 
   
 0.564
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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