STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2870KEGG: slt:Slit_2956 carbonic anhydrase family 3. (179 aa)    
Predicted Functional Partners:
Galf_0040
KEGG: slt:Slit_0028 carbonate dehydratase; PFAM: carbonic anhydrase.
    
 
 0.879
Galf_0034
KEGG: slt:Slit_0022 ribulose-bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit-like; Belongs to the RuBisCO large chain family.
    
 
 0.837
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.779
Galf_2869
PFAM: Protein of unknown function DUF2288; KEGG: slt:Slit_2955 protein of unknown function DUF2288.
       0.759
Galf_2872
SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: dar:Daro_1381 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III.
       0.588
Galf_1860
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; KEGG: slt:Slit_1856 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
  
  
 0.522
Galf_0138
KEGG: slt:Slit_2931 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase.
  
  
 0.504
Galf_1811
Thioredoxin; KEGG: slt:Slit_2205 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein.
   
   0.431
Galf_0483
PFAM: cellulose synthase operon C domain protein; KEGG: reu:Reut_B3525 TPR repeat-containing cellulose synthase operon C.
    
   0.430
Galf_2446
Thioredoxin; KEGG: slt:Slit_1011 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; Belongs to the thioredoxin family.
    
   0.430
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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