STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhASugar isomerase (SIS); Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. (195 aa)    
Predicted Functional Partners:
Galf_2099
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: slt:Slit_0470 histidinol-phosphate phosphatase family protein.
  
 0.995
Galf_2896
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
   
 0.994
Galf_1151
KEGG: slt:Slit_2055 RfaE bifunctional protein; TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein.
  
 0.987
Galf_2895
PFAM: transport-associated; KEGG: azo:azo0869 hypothetical protein.
  
    0.867
Galf_2897
KEGG: slt:Slit_2968 protein of unknown function DUF971.
       0.782
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
   
   0.777
Galf_2893
PFAM: uncharacterized protein family UPF0102; KEGG: slt:Slit_2964 protein of unknown function UPF0102; Belongs to the UPF0102 family.
  
  
 0.745
Galf_0199
PFAM: glycosyl transferase family 9; KEGG: slt:Slit_0315 glycosyl transferase family 9.
 
   
 0.734
Galf_0514
KEGG: slt:Slit_2100 lipopolysaccharide heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9.
 
   
 0.729
Galf_2892
KEGG: slt:Slit_2963 LppC family lipoprotein.
  
    0.727
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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