STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2924Helix-turn-helix domain protein; KEGG: har:HEAR0512 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (73 aa)    
Predicted Functional Partners:
Galf_1831
Helix-turn-helix domain protein; KEGG: pna:Pnap_4162 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
   
 0.541
Galf_2923
KEGG: psl:Psta_3817 protein of unknown function DUF1080.
       0.530
Galf_1524
PFAM: HipA domain protein; KEGG: app:CAP2UW1_2145 HipA domain protein.
 
 
 0.514
Galf_1479
AAA ATPase; KEGG: app:CAP2UW1_1395 hypothetical protein; manually curated; SMART: AAA ATPase.
    
 
 0.449
Galf_1664
KEGG: pph:Ppha_0746 hypothetical protein.
    
 
 0.449
Galf_2929
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_3044 LysR family transcriptional regulator.
 
    0.442
Galf_0974
KEGG: bxe:Bxe_C1366 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
 
 0.432
Galf_0996
KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
 
 0.432
Galf_1002
KEGG: bpt:Bpet0232 hypothetical protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein.
  
 
 0.432
Galf_1839
PFAM: HipA domain protein; KEGG: alv:Alvin_0433 HipA domain protein.
  
 
 0.432
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.