STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0009PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Lcho_0008
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: eba:ebA2890 hypothetical protein.
 
   
 0.919
Lcho_0583
PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0515 beta-lactamase domain protein.
  
    0.507
Lcho_4053
PFAM: beta-lactamase domain protein; KEGG: aav:Aave_0282 beta-lactamase domain protein.
  
    0.507
Lcho_0007
Putative PAS/PAC sensor protein; KEGG: pna:Pnap_0166 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.442
Lcho_2302
KEGG: dac:Daci_5392 hypothetical protein.
  
     0.410
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.