STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0010KEGG: pol:Bpro_2657 hypothetical protein. (228 aa)    
Predicted Functional Partners:
Lcho_0011
PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein.
       0.642
Lcho_0012
KEGG: pol:Bpro_2659 ABC-type transport system ipermease component.
       0.642
Lcho_0013
PFAM: protein of unknown function UPF0118; KEGG: rfr:Rfer_2147 protein of unknown function UPF0118.
       0.478
Lcho_0014
KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase.
       0.478
Lcho_0015
PFAM: 2OG-Fe(II) oxygenase; KEGG: cvi:CV_0045 probable oxidoreductase iron/ascorbate family; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.478
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.