STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0022KEGG: rme:Rmet_4161 putative transmembrane protein. (456 aa)    
Predicted Functional Partners:
Lcho_0018
KEGG: rso:RSc2274 putative lipoprotein.
 
   
 0.926
Lcho_0019
KEGG: bxe:Bxe_A2972 putative transmembrane protein.
 
   
 0.926
Lcho_0020
KEGG: abo:ABO_0894 hypothetical protein.
 
   
 0.926
Lcho_0021
PFAM: glycosyl transferase group 1; KEGG: reh:H16_B2199 lipopolysaccharide N-acetylglucosaminyl transferase.
 
   
 0.912
Lcho_0016
PFAM: polysaccharide deacetylase; KEGG: ajs:Ajs_0773 polysaccharide deacetylase.
 
   
 0.908
Lcho_0017
KEGG: ajs:Ajs_0772 tetratricopeptide TPR_2 repeat protein.
 
   
 0.901
Lcho_0023
PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: rso:RS01781 hypothetical protein.
       0.773
Lcho_0255
KEGG: mms:mma_1857 hypothetical protein.
  
     0.496
Lcho_4312
KEGG: reu:Reut_B5395 probable transmembrane protein.
  
     0.434
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.