STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0029PFAM: protein of unknown function DUF427; KEGG: mpt:Mpe_A1381 hypothetical protein. (93 aa)    
Predicted Functional Partners:
Lcho_0030
PFAM: protein of unknown function DUF323; KEGG: mpt:Mpe_A1379 hypothetical protein.
 
     0.850
Lcho_1724
KEGG: rme:Rmet_2566 putative uncharacterized conserved protein.
 
     0.688
Lcho_1725
PFAM: protein of unknown function DUF323; KEGG: pol:Bpro_1756 protein of unknown function DUF323.
 
     0.572
Lcho_0031
KEGG: mpt:Mpe_A1056 periplasmic protein/biopolymer transport.
       0.516
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.