STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0067PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll2736 putative aldehyde dehydrogenase protein. (756 aa)    
Predicted Functional Partners:
Lcho_0068
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: smd:Smed_6324 (2Fe-2S)-binding domain protein.
 
 0.987
Lcho_1987
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc0626 probable aldehyde dehydrogenase (subunit III) oxidoreductase protein.
 
 0.947
Lcho_4306
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rle:RL2499 putative isoquinoline 1-oxidoreductase alpha subunit.
 
 0.945
Lcho_0065
KEGG: bbt:BBta_2763 sulfur oxidation protein SoxY.
 
     0.820
Lcho_0066
KEGG: bbt:BBta_2764 putative cytochrome c, putative SoxX protein.
 
   
 0.818
Lcho_0063
KEGG: bja:bll2732 putative cytochrome c.
 
   
 0.774
Lcho_0064
PFAM: Sulphur oxidation protein SoxZ; KEGG: bja:bll2733 probable sulfur oxidation protein.
 
     0.755
Lcho_4304
PFAM: protein of unknown function DUF182; KEGG: aav:Aave_3933 protein of unknown function DUF182.
 
  
 0.747
Lcho_1558
PFAM: protein of unknown function DUF182; KEGG: rso:RSc1463 hypothetical protein.
 
  
 0.744
Lcho_2921
KEGG: mpt:Mpe_A2928 hypothetical protein.
 
   
 0.605
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.