STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0085SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: pfo:Pfl_3676 serine/threonine protein kinase. (464 aa)    
Predicted Functional Partners:
Lcho_0086
KEGG: pol:Bpro_0661 D-serine deaminase.
       0.773
Lcho_0087
GAF modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_0620 GAF modulated sigma54 specific transcriptional regulator, fis family.
       0.523
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.516
Lcho_0088
PFAM: Rhodanese domain protein; KEGG: mgm:Mmc1_2517 rhodanese domain protein.
       0.414
Lcho_2793
PFAM: Dual specificity protein phosphatase; SMART: Protein-tyrosine phosphatase, catalytic; KEGG: rpe:RPE_4503 ADP-ribosylation/crystallin J1.
  
   
 0.411
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.