STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0099KEGG: mpt:Mpe_A0556 putative lipoprotein. (292 aa)    
Predicted Functional Partners:
Lcho_1013
KEGG: mpt:Mpe_A2863 flagellar chaperone.
  
     0.715
Lcho_2122
PFAM: acyltransferase 3; KEGG: reu:Reut_B3984 acyltransferase 3.
  
     0.709
Lcho_3450
KEGG: mpt:Mpe_A3155 hypothetical protein.
  
     0.692
Lcho_1980
KEGG: pol:Bpro_3522 hypothetical protein.
  
     0.657
glmU
UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
       0.608
Lcho_3582
KEGG: mpt:Mpe_A2075 conserved hypothetical signal peptide protein.
  
     0.606
Lcho_0645
KEGG: pna:Pnap_4284 hypothetical protein.
  
     0.555
Lcho_0097
PFAM: heat shock protein DnaJ domain protein.
       0.549
Lcho_2907
KEGG: mms:mma_3357 type IV pilus assembly protein PilW.
  
     0.546
Lcho_1827
KEGG: rfr:Rfer_1303 hypothetical protein.
  
     0.533
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.