STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0111PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A3295 putative transglycosylase. (690 aa)    
Predicted Functional Partners:
Lcho_1973
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2530 membrane-bound lytic murein transglycosylase D, putative.
 
  
 0.644
Lcho_0110
NADH dehydrogenase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mpt:Mpe_A3296 nucleoside-diphosphate-sugar epimerase.
       0.642
Lcho_2808
KEGG: mpt:Mpe_A1280 hypothetical protein.
  
    0.568
Lcho_2926
PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2937 hypothetical protein.
  
   
 0.559
Lcho_0112
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3294 LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
       0.512
Lcho_1011
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.486
Lcho_1019
KEGG: mpt:Mpe_A0568 flagellar biosynthesis ATPase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase.
  
  
 0.481
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: mpt:Mpe_A0564 flagellar hook-basal body protein.
  
  
 0.478
Lcho_0575
PFAM: Lytic transglycosylase catalytic; KEGG: aav:Aave_3669 lytic transglycosylase, catalytic.
  
   
 0.477
Lcho_4002
KEGG: mpt:Mpe_A0273 hypothetical protein.
  
     0.444
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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