STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0116PFAM: OmpW family protein; KEGG: dac:Daci_4836 OmpW family protein. (198 aa)    
Predicted Functional Partners:
Lcho_2771
KEGG: mpt:Mpe_A2470 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.886
Lcho_2778
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: mpt:Mpe_A2477 putative cytochrome-c oxidase, subunit II.
 
    0.847
Lcho_2779
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: mpt:Mpe_A2478 putative cytochrome c oxidase (subunit I) transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.742
Lcho_2775
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pna:Pnap_3778 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
    0.579
Lcho_0728
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pna:Pnap_2096 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
    0.570
Lcho_2776
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.565
Lcho_1477
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pna:Pnap_2096 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
    0.562
Lcho_1283
PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0715 beta-lactamase domain protein.
   
    0.533
Lcho_0703
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.515
Lcho_2217
PFAM: protein of unknown function DUF344; KEGG: reh:H16_A1212 hypothetical protein.
   
    0.485
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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