STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0141PFAM: outer membrane efflux protein; KEGG: dac:Daci_1739 outer membrane efflux protein. (412 aa)    
Predicted Functional Partners:
Lcho_0142
KEGG: dac:Daci_1740 hypothetical protein.
 
 
 0.968
Lcho_0143
KEGG: dac:Daci_1741 conserved hypothetical secreted protein.
 
 
 0.968
Lcho_0144
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dac:Daci_1742 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.897
Lcho_0145
KEGG: dac:Daci_1743 hypothetical protein.
 
     0.893
Lcho_2049
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.649
Lcho_1458
TIGRFAM: hydrogenase maturation protease; KEGG: bxe:Bxe_C0532 hypothetical protein.
  
 
   0.608
Lcho_1726
PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1614 glycosyl transferase, group 1.
  
   
 0.574
Lcho_1819
PFAM: thiamineS protein; KEGG: mpt:Mpe_A2579 hypothetical protein.
  
     0.538
Lcho_3741
KEGG: azo:azo2558 membrane protein with HlyD domain.
  
 
 0.535
Lcho_0140
KEGG: dac:Daci_1738 hypothetical protein.
       0.529
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.