STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0147KEGG: ajs:Ajs_1464 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Lcho_0148
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase.
       0.551
Lcho_3412
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
     0.547
Lcho_0354
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.483
Lcho_0146
KEGG: pna:Pnap_1251 hypothetical protein.
       0.482
Lcho_2568
KEGG: pna:Pnap_1235 hypothetical protein.
  
     0.477
Lcho_0145
KEGG: dac:Daci_1743 hypothetical protein.
 
     0.423
Lcho_0922
PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A3564 putative transmembrane protein.
  
     0.407
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.