STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0157TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mfa:Mfla_0434 ammonium transporter. (447 aa)    
Predicted Functional Partners:
Lcho_3942
PFAM: nitrogen regulatory protein P-II; KEGG: mpt:Mpe_A0171 nitrogen regulatory protein P-II-2; Belongs to the P(II) protein family.
 
 0.924
Lcho_0156
PFAM: nitrogen regulatory protein P-II; KEGG: mpt:Mpe_A0171 nitrogen regulatory protein P-II-2; Belongs to the P(II) protein family.
 
 0.921
Lcho_2899
PFAM: nitrogen regulatory protein P-II; KEGG: mpt:Mpe_A2112 putative nitrogen regulatory p-II transcription regulator protein; Belongs to the P(II) protein family.
 
 0.913
Lcho_3396
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mpt:Mpe_A3103 glutamate synthase (ferredoxin).
 
  
 0.675
Lcho_0155
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pmy:Pmen_3460 glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
       0.635
Lcho_4212
KEGG: mfa:Mfla_1283 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.548
Lcho_3583
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: mpt:Mpe_A2074 putative nitrogen regulation protein NR(II).
  
 
 0.531
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.477
Lcho_0158
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
       0.473
Lcho_0160
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2188 transcriptional regulator, LysR-family.
  
    0.450
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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