STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0200PFAM: protein of unknown function DUF444; KEGG: mpt:Mpe_A3778 hypothetical protein; Belongs to the UPF0229 family. (428 aa)    
Predicted Functional Partners:
Lcho_0199
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mpt:Mpe_A3779 hypothetical protein.
 
  
 0.995
Lcho_0201
PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein.
 
  
 0.993
Lcho_2029
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: mpt:Mpe_A1537 PhoH-like ATPase.
   
    0.459
Lcho_4252
PFAM: protein of unknown function DUF883 ElaB; KEGG: rfr:Rfer_2238 protein of unknown function DUF883, ElaB.
   
    0.454
Lcho_1344
Hypothetical protein.
   
    0.453
Lcho_4253
KEGG: rfr:Rfer_2237 putative transmembrane protein.
   
    0.405
Lcho_4181
PFAM: protein of unknown function DUF1508; KEGG: ecx:EcHS_A2222 hypothetical protein.
   
    0.403
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.